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Lactobacillus intestinalis (Species)

Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus intestinalis;

This taxon was found in 90.0% of laboratory mice stomach, 75.0% of laboratory mice duodenum, 79.41% of laboratory mice jejunum, 75.0% of laboratory mice ileum, 4.0% of laboratory mice cecum, 10.0% of laboratory mice colon, 3.46% of laboratory mice feces (with ≥1% threshold).

Relative abundance

Relative abundance in each sample

Sample accession Project accession Sampling location Genotype Vendor Origin Count Relative abundance (%)
ERS2716365 ERP110263 Jejunum C57BL/6 Envigo Laboratory 22340 37.06
ERS2716622 ERP110263 Stomach C57BL/6 Envigo Laboratory 18404 28.95
ERS2716499 ERP110263 Jejunum C57BL/6 Envigo Laboratory 14379 21.32
ERS2716689 ERP110263 Stomach C57BL/6 Envigo Laboratory 10392 20.86
ERS2716733 ERP110263 Stomach C57BL/6 Envigo Laboratory 5302 19.97
ERS2716666 ERP110263 Stomach C57BL/6 Envigo Laboratory 2011 19.86
SRS4889434 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 5947 19.01
ERS2716287 ERP110263 Ileum C57BL/6 Envigo Laboratory 9381 18.09
ERS2716700 ERP110263 Stomach C57BL/6 Envigo Laboratory 10353 17.96
ERS2716298 ERP110263 Ileum C57BL/6 Envigo Laboratory 1955 17.83
ERS2716432 ERP110263 Jejunum C57BL/6 Envigo Laboratory 2637 17.66
ERS2716398 ERP110263 Jejunum C57BL/6 Envigo Laboratory 7956 16.73
ERS2716711 ERP110263 Stomach C57BL/6 Envigo Laboratory 7722 16.65
SRS4889811 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 6030 16.35
ERS2716220 ERP110263 Ileum C57BL/6 Envigo Laboratory 8932 15.64
ERS2716633 ERP110263 Stomach C57BL/6 Envigo Laboratory 9367 15.22
ERS2716532 ERP110263 Jejunum C57BL/6 Envigo Laboratory 9139 15.04
ERS2716331 ERP110263 Ileum C57BL/6 Envigo Laboratory 3780 14.56
ERS2716264 ERP110263 Ileum C57BL/6 Envigo Laboratory 6363 12.16
SRS4889318 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 1828 11.44
ERS2716231 ERP110263 Ileum C57BL/6 Envigo Laboratory 1870 11.04
ERS2716309 ERP110263 Ileum C57BL/6 Envigo Laboratory 4424 10.92
ERS2716197 ERP110263 Duodenum C57BL/6 Envigo Laboratory 5143 10.71
ERS2716443 ERP110263 Jejunum C57BL/6 Envigo Laboratory 727 9.48
ERS2716682 ERP110263 Stomach C57BL/6 Envigo Laboratory 5018 8.82
ERS2716748 ERP110263 Stomach C57BL/6 Envigo Laboratory 4219 8.48
SRS4889319 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 1562 8.03
ERS2716097 ERP110263 Duodenum C57BL/6 Envigo Laboratory 2499 7.54
SRS4889711 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2137 7.18
ERS2716480 ERP110263 Jejunum C57BL/6 Envigo Laboratory 1503 7.17
SRS4889814 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2995 7.17
ERS2716242 ERP110263 Ileum C57BL/6 Envigo Laboratory 4148 7.15
ERS2716164 ERP110263 Duodenum C57BL/6 Envigo Laboratory 947 6.98
ERS2716644 ERP110263 Stomach C57BL/6 Envigo Laboratory 4397 6.91
ERS2716387 ERP110263 Jejunum C57BL/6 Envigo Laboratory 3926 6.76
SRS4889826 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2614 6.60
ERS2716655 ERP110263 Stomach C57BL/6 Envigo Laboratory 3521 6.51
ERS2716722 ERP110263 Stomach C57BL/6 Envigo Laboratory 2685 6.37
ERS2716280 ERP110263 Ileum C57BL/6 Envigo Laboratory 1841 5.77
ERS2716253 ERP110263 Ileum C57BL/6 Envigo Laboratory 1354 5.51
ERS2716838 ERP110263 Feces C57BL/6 Envigo Laboratory 3252 5.43
ERS2716086 ERP110263 Duodenum C57BL/6 Envigo Laboratory 3120 5.27
ERS2716141 ERP110263 Duodenum C57BL/6 Envigo Laboratory 2860 4.61
ERS2716547 ERP110263 Jejunum C57BL/6 Envigo Laboratory 1693 4.58
ERS2716376 ERP110263 Jejunum C57BL/6 Envigo Laboratory 2606 4.52
SRS347314 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 360 4.41
SRS347309 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 230 4.28
ERS2716510 ERP110263 Jejunum C57BL/6 Envigo Laboratory 2677 4.23
ERS2716130 ERP110263 Duodenum C57BL/6 Envigo Laboratory 1159 4.17
ERS2716681 ERP110263 Stomach C57BL/6 Envigo Laboratory 2264 4.15
ERS2716108 ERP110263 Duodenum C57BL/6 Envigo Laboratory 2580 4.13
ERS2716566 ERP110263 Jejunum C57BL/6 Envigo Laboratory 958 4.10
ERS2716478 ERP110263 Jejunum C57BL/6 Envigo Laboratory 716 3.92
SRS4889650 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 1056 3.81
ERS2716747 ERP110263 Stomach C57BL/6 Envigo Laboratory 1346 3.80
SRS4889769 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 1165 3.79
ERS2716344 ERP110263 Ileum C57BL/6 Envigo Laboratory 2126 3.64
ERS2716839 ERP110263 Feces C57BL/6 Envigo Laboratory 2538 3.60
ERS2716614 ERP110263 Jejunum C57BL/6 Envigo Laboratory 2093 3.55
ERS2716145 ERP110263 Duodenum C57BL/6 Envigo Laboratory 1220 3.26
ERS2716577 ERP110263 Jejunum C57BL/6 Envigo Laboratory 1375 3.06
ERS2716354 ERP110263 Jejunum C57BL/6 Envigo Laboratory 1773 3.03
ERS2716479 ERP110263 Jejunum C57BL/6 Envigo Laboratory 756 3.02
ERS2716346 ERP110263 Ileum C57BL/6 Envigo Laboratory 1340 2.98
ERS2716746 ERP110263 Stomach C57BL/6 Envigo Laboratory 1176 2.92
ERS2716421 ERP110263 Jejunum C57BL/6 Envigo Laboratory 743 2.88
ERS2715846 ERP110263 Colon C57BL/6 Envigo Laboratory 1404 2.83
ERS2716213 ERP110263 Ileum C57BL/6 Envigo Laboratory 1241 2.39
ERS2716476 ERP110263 Jejunum C57BL/6 Envigo Laboratory 705 2.36
ERS2716840 ERP110263 Feces C57BL/6 Envigo Laboratory 1418 2.25
ERS2716842 ERP110263 Feces C57BL/6 Envigo Laboratory 1566 2.20
ERS2716613 ERP110263 Jejunum C57BL/6 Envigo Laboratory 1185 2.20
SRS347312 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 119 2.19
ERS2716186 ERP110263 Duodenum C57BL/6 Envigo Laboratory 352 2.02
ERS2715892 ERP110263 Colon C57BL/6 Envigo Laboratory 971 1.99
SRS347310 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 209 1.90
ERS2716545 ERP110263 Jejunum C57BL/6 Envigo Laboratory 1288 1.87
ERS2716680 ERP110263 Stomach C57BL/6 Envigo Laboratory 1181 1.87
ERS2716342 ERP110263 Ileum C57BL/6 Envigo Laboratory 1137 1.86
ERS2716612 ERP110263 Jejunum C57BL/6 Envigo Laboratory 1165 1.81
ERS2716555 ERP110263 Jejunum C57BL/6 Envigo Laboratory 783 1.67
ERS2716278 ERP110263 Ileum C57BL/6 Envigo Laboratory 884 1.50
ERS2716488 ERP110263 Jejunum C57BL/6 Envigo Laboratory 892 1.50
ERS2716677 ERP110263 Stomach C57BL/6 Envigo Laboratory 468 1.36
ERS2715779 ERP110263 Colon C57BL/6 Envigo Laboratory 949 1.31
ERS2716610 ERP110263 Jejunum C57BL/6 Envigo Laboratory 577 1.30
ERS2716026 ERP110263 Cecum C57BL/6 Envigo Laboratory 571 1.24
ERS2716413 ERP110263 Jejunum C57BL/6 Envigo Laboratory 443 1.22
ERS2716543 ERP110263 Jejunum C57BL/6 Envigo Laboratory 671 1.22
ERS2715790 ERP110263 Colon C57BL/6 Envigo Laboratory 598 1.21
ERS2716146 ERP110263 Duodenum C57BL/6 Envigo Laboratory 414 1.16
ERS2716744 ERP110263 Stomach C57BL/6 Envigo Laboratory 610 1.15
ERS2715980 ERP110263 Cecum C57BL/6 Envigo Laboratory 559 1.14
ERS2716144 ERP110263 Duodenum C57BL/6 Envigo Laboratory 735 1.12
ERS2716208 ERP110263 Duodenum C57BL/6 Envigo Laboratory 135 1.12
ERS2716548 ERP110263 Jejunum C57BL/6 Envigo Laboratory 583 0.99
ERS2716143 ERP110263 Duodenum C57BL/6 Envigo Laboratory 641 0.96
ERS2716615 ERP110263 Stomach C57BL/6 Envigo Laboratory 577 0.96
ERS2715828 ERP110263 Colon C57BL/6 Envigo Laboratory 167 0.87
ERS2716345 ERP110263 Ileum C57BL/6 Envigo Laboratory 261 0.86
SRS347313 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 72 0.83
ERS2716409 ERP110263 Jejunum C57BL/6 Envigo Laboratory 271 0.79
ERS1069635 ERP014408 Feces C57BL/6 Envigo Laboratory 403 0.79
ERS2715812 ERP110263 Colon C57BL/6 Envigo Laboratory 514 0.73
ERS2716844 ERP110263 Feces C57BL/6 Envigo Laboratory 490 0.72
ERS2716841 ERP110263 Feces C57BL/6 Envigo Laboratory 507 0.72
SRS347306 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 60 0.72
ERS2715879 ERP110263 Colon C57BL/6 Envigo Laboratory 238 0.70
ERS2715768 ERP110263 Colon C57BL/6 Envigo Laboratory 460 0.70
ERS2715835 ERP110263 Colon C57BL/6 Envigo Laboratory 313 0.66
ERS2716279 ERP110263 Ileum C57BL/6 Envigo Laboratory 112 0.63
ERS2716320 ERP110263 Ileum C57BL/6 Envigo Laboratory 148 0.59
ERS2716588 ERP110263 Jejunum C57BL/6 Envigo Laboratory 135 0.57
ERS2716275 ERP110263 Ileum C57BL/6 Envigo Laboratory 311 0.55
ERS2716119 ERP110263 Duodenum C57BL/6 Envigo Laboratory 343 0.54
ERS2715857 ERP110263 Colon C57BL/6 Envigo Laboratory 108 0.54
ERS2716175 ERP110263 Duodenum C57BL/6 Envigo Laboratory 316 0.50
ERS2715894 ERP110263 Colon C57BL/6 Envigo Laboratory 60 0.48
ERS2716277 ERP110263 Ileum C57BL/6 Envigo Laboratory 55 0.46
ERS2715969 ERP110263 Cecum C57BL/6 Envigo Laboratory 256 0.44
ERS2715868 ERP110263 Colon C57BL/6 Envigo Laboratory 188 0.42
ERS2716013 ERP110263 Cecum C57BL/6 Envigo Laboratory 140 0.41
ERS2716412 ERP110263 Jejunum C57BL/6 Envigo Laboratory 249 0.40
ERS2716028 ERP110263 Cecum C57BL/6 Envigo Laboratory 218 0.38
ERS2716521 ERP110263 Jejunum C57BL/6 Envigo Laboratory 225 0.38
SRS347305 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 33 0.38
ERS2715913 ERP110263 Cecum C57BL/6 Envigo Laboratory 212 0.35
SRS876778 SRP056326 Feces A/J Envigo Laboratory 200 0.34
ERS2715893 ERP110263 Colon C57BL/6 Envigo Laboratory 216 0.32
SRS347311 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 33 0.31
ERS2715962 ERP110263 Cecum C57BL/6 Envigo Laboratory 82 0.31
ERS2716079 ERP110263 Duodenum C57BL/6 Envigo Laboratory 192 0.30
SRS2290203 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 96 0.29
SRS940871 SRP058488 Feces C57BL/6 Charles River Laboratories Laboratory 38 0.29
ERS2716411 ERP110263 Jejunum C57BL/6 Envigo Laboratory 170 0.26
ERS2716679 ERP110263 Stomach C57BL/6 Envigo Laboratory 160 0.24
SRS4889376 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 59 0.23
ERS2716846 ERP110263 Feces C57BL/6 Envigo Laboratory 136 0.22
ERS2715801 ERP110263 Colon C57BL/6 Envigo Laboratory 117 0.21
ERS2715991 ERP110263 Cecum C57BL/6 Envigo Laboratory 47 0.18
SRS876901 SRP056326 Feces C57BL/6 Envigo Laboratory 87 0.18
ERS2716843 ERP110263 Feces C57BL/6 Envigo Laboratory 110 0.17
SRS347307 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 10 0.17
ERS2715890 ERP110263 Colon C57BL/6 Envigo Laboratory 89 0.16
SRS876852 SRP056326 Feces A/J Envigo Laboratory 100 0.16
ERS2716027 ERP110263 Cecum C57BL/6 Envigo Laboratory 72 0.15
ERS2715959 ERP110263 Cecum C57BL/6 Envigo Laboratory 99 0.14
SRS4889824 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 5 0.14
SRS4889641 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 25 0.14
SRS876774 SRP056326 Feces A/J Envigo Laboratory 78 0.13
ERS2715826 ERP110263 Colon C57BL/6 Envigo Laboratory 53 0.11
ERS2716481 ERP110263 Jejunum C57BL/6 Envigo Laboratory 68 0.11
ERS2715924 ERP110263 Cecum C57BL/6 Envigo Laboratory 75 0.11
ERS2715761 ERP110263 Colon C57BL/6 Envigo Laboratory 69 0.11
ERS2716024 ERP110263 Cecum C57BL/6 Envigo Laboratory 48 0.10
SRS347308 SRP012588 Cecum C3H/Ri The Jackson Laboratory Laboratory 20 0.09
SRS876928 SRP056326 Feces C57BL/6 Envigo Laboratory 46 0.08
SRS1981753 SRP099935 Feces C57BL/6 Animal Resource Centre Laboratory 32 0.07
ERS2715902 ERP110263 Cecum C57BL/6 Envigo Laboratory 40 0.07
SRS876807 SRP056326 Feces C57BL/6 Envigo Laboratory 46 0.07
ERS2716002 ERP110263 Cecum C57BL/6 Envigo Laboratory 16 0.07
ERS2715895 ERP110263 Cecum C57BL/6 Envigo Laboratory 30 0.06
ERS2715946 ERP110263 Cecum C57BL/6 Envigo Laboratory 39 0.06
ERS2715823 ERP110263 Colon C57BL/6 Envigo Laboratory 37 0.06
SRS1981755 SRP099935 Feces C57BL/6 Animal Resource Centre Laboratory 27 0.06
ERS2715935 ERP110263 Cecum C57BL/6 Envigo Laboratory 35 0.06
SRS4889343 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 15 0.05
SRS4889619 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 18 0.04
ERS2715960 ERP110263 Cecum C57BL/6 Envigo Laboratory 18 0.03
ERS2716845 ERP110263 Feces C57BL/6 Envigo Laboratory 16 0.03
SRS876902 SRP056326 Feces C57BL/6 Envigo Laboratory 16 0.03
ERS2715961 ERP110263 Cecum C57BL/6 Envigo Laboratory 23 0.03
ERS2715825 ERP110263 Colon C57BL/6 Envigo Laboratory 23 0.03
SRS1981754 SRP099935 Feces C57BL/6 Animal Resource Centre Laboratory 16 0.03
ERS2716837 ERP110263 Feces C57BL/6 Envigo Laboratory 16 0.03
SRS876950 SRP056326 Feces C57BL/6 Envigo Laboratory 14 0.02
SRS876806 SRP056326 Feces C57BL/6 Envigo Laboratory 12 0.02
SRS347390 SRP012588 Cecum WSB/EiJ The Jackson Laboratory Laboratory 2 0.02
SRS876949 SRP056326 Feces C57BL/6 Envigo Laboratory 10 0.02
SRS876929 SRP056326 Feces C57BL/6 Envigo Laboratory 10 0.02
SRS1981756 SRP099935 Feces C57BL/6 Animal Resource Centre Laboratory 6 0.02
ERS2715957 ERP110263 Cecum C57BL/6 Envigo Laboratory 10 0.02
SRS876952 SRP056326 Feces C57BL/6 Envigo Laboratory 9 0.01
SRS876951 SRP056326 Feces C57BL/6 Envigo Laboratory 8 0.01
SRS876917 SRP056326 Feces A/J Envigo Laboratory 10 0.01
SRS1099729 SRP064488 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
SRS4889617 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 6 0.01
SRS876944 SRP056326 Feces A/J Envigo Laboratory 6 0.01
SRS876844 SRP056326 Feces C57BL/6 Envigo Laboratory 6 0.01
SRS1099750 SRP064488 Feces C57BL/6 The Jackson Laboratory Laboratory 1 0.01
SRS876808 SRP056326 Feces C57BL/6 Envigo Laboratory 5 0.01
SRS2290202 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2 0.01
SRS876801 SRP056326 Feces A/J Envigo Laboratory 6 0.01
SRS1099749 SRP064488 Feces C57BL/6 The Jackson Laboratory Laboratory 1 0.01
SRS876799 SRP056326 Feces A/J Envigo Laboratory 5 0.01
SRS2290148 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1 0.01
SRS4889707 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
SRS4889273 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 2 0.01
SRS876858 SRP056326 Feces A/J Envigo Laboratory 5 0.01
SRS876809 SRP056326 Feces C57BL/6 Envigo Laboratory 4 0.01
SRS876775 SRP056326 Feces A/J Envigo Laboratory 4 0.01
SRS4889697 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
SRS876800 SRP056326 Feces A/J Envigo Laboratory 4 0.01
SRS876861 SRP056326 Feces A/J Envigo Laboratory 4 0.01
SRS4889877 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
SRS4889493 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.01
ERS2715827 ERP110263 Colon C57BL/6 Envigo Laboratory 4 0.01
SRS4889861 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 2 0.00
SRS4889872 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 2 0.00
SRS2290081 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2 0.00
SRS2290238 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1 0.00
SRS4889336 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 2 0.00
SRS2290075 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 2 0.00
SRS876777 SRP056326 Feces A/J Envigo Laboratory 3 0.00
SRS876903 SRP056326 Feces C57BL/6 Envigo Laboratory 2 0.00
SRS4889876 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 1 0.00
SRS4889696 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 2 0.00
SRS876841 SRP056326 Feces C57BL/6 Envigo Laboratory 2 0.00
SRS876904 SRP056326 Feces C57BL/6 Envigo Laboratory 2 0.00
SRS4889733 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 1 0.00
SRS2290233 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1 0.00
SRS876881 SRP056326 Feces C57BL/6 Envigo Laboratory 2 0.00
SRS4889699 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 1 0.00
SRS2290204 SRP109346 Ileocecum Mus musculus domesticus Wild mouse Wild 1 0.00
SRS4889324 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 1 0.00
SRS4889695 SRP200540 Feces C57BL/6 Taconic Biosciences Laboratory 1 0.00
SRS4889551 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 1 0.00
SRS4889366 SRP200540 Cecum Mus musculus domesticus Wild mouse Wild 1 0.00
SRS876789 SRP056326 Feces C57BL/6 The Jackson Laboratory Laboratory 1 0.00
SRS4889553 SRP200540 Feces C57BL/6 The Jackson Laboratory Laboratory 1 0.00
SRS876842 SRP056326 Feces C57BL/6 Envigo Laboratory 1 0.00
SRS876942 SRP056326 Feces A/J Envigo Laboratory 1 0.00
SRS876879 SRP056326 Feces C57BL/6 Envigo Laboratory 1 0.00
SRS876919 SRP056326 Feces A/J Envigo Laboratory 1 0.00
SRS876918 SRP056326 Feces A/J Envigo Laboratory 1 0.00